pegasus.annotate¶

pegasus.annotate(data, name, based_on, anno_dict)[source]¶

Add annotation to AnnData obj.

Parameters

data (AnnData) – AnnData object.
name (str) – Name of the new annotation in data.obs.
based_on (str) – Name of the attribute the cluster ids coming from.
anno_dict (Dict[str, str]) – Dictionary mapping from cluster id to cell type.

Returns

Return type

None

Examples

>>> annotate_cluster.annotate(data, 'anno', 'spectral_louvain_labels', {'1': 'T cell', '2': 'B cell'})