pegasus.correct_batch¶
-
pegasus.
correct_batch
(data, features=None)[source]¶ Batch correction on data.
- Parameters
data (
anndata.AnnData
) – Annotated data matrix with rows for cells and columns for genes.features (str, optional, default:
None
) – Features to be included in batch correction computation. IfNone
, simply consider all features.
- Return type
None
- Returns
None
Update
data.X
by the corrected count matrix.
Examples
>>> pg.correct_batch(adata, features = "highly_variable_features")