pegasus.dotplot¶
-
pegasus.
dotplot
(adata, keys, by, reduce_function=<function mean>, fraction_min=0, fraction_max=None, dot_min=1, dot_max=26, use_raw=None, cmap='Reds', sort_function=None, **kwds)[source]¶ Generate a dot plot.
- Parameters
adata (
AnnData
) – Annotated data matrix.keys (
Union
[str
,List
[str
],Tuple
[str
]]) – Keys for accessing variables of adata.var_namesby (
str
) – Group plot by specified observation.cmap (
Union
[str
,List
[str
],Tuple
[str
]]) – Color map name (hv.plotting.list_cmaps()) or a list of hex colors. See http://holoviews.org/user_guide/Styling_Plots.html for more information.reduce_function (
Callable
[[ndarray
],float
]) – Function to summarize an element in the heatmapfraction_min (
float
) – Minimum fraction expressed value.fraction_max (
Optional
[float
]) – Maximum fraction expressed value.dot_min (
int
) – Minimum pixel dot size.dot_max (
int
) – Maximum pixel dot size.use_raw (
Optional
[bool
]) – Use raw attribute of adata if present.sort_function (
Optional
[Callable
[[DataFrame
],List
[str
]]]) – Optional function that accepts summarized data frame and returns a list of row indices in the order to render in the heatmap.
- Return type
Element