pegasus.reduce_diffmap_to_3d¶
-
pegasus.
reduce_diffmap_to_3d
(data, random_state=0)[source]¶ Reduce high-dimensional Diffusion Map matrix to 3-dimentional.
- Parameters
data (
anndata.AnnData
) – Annotated data matrix with rows for cells and columns for genes.
- random_state:
int
, optional, default:0
Random seed set for reproducing results.
- Return type
None
- Returns
None
Update
data.obsm
–data.obsm["X_diffmap_pca"]
: 3D Diffusion Map matrix of data.
Examples
>>> pg.reduce_diffmap_to_3d(adata)