pegasus.scatter¶
-
pegasus.
scatter
(adata, x, y, color=None, size=None, dot_min=2, dot_max=14, use_raw=None, sort=True, width=400, height=400, nbins=-1, reduce_function=<function amax>, cmap=None, palette=None, **kwds)[source]¶ Generate a scatter plot.
- Parameters
adata (
AnnData
) – Annotated data matrix.x (
str
) – Key for accessing variables of adata.var_names, field of adata.var, or field of adata.obsy (
str
) – Key for accessing variables of adata.var_names, field of adata.var, or field of adata.obscmap (
Union
[str
,List
[str
],Tuple
[str
],None
]) – Color map for continuous variables.palette (
Union
[str
,List
[str
],Tuple
[str
],None
]) – Color map for categorical variables.color (
Optional
[str
]) – Field in .var_names, adata.var, or adata.obs to color the points by.sort (
bool
) – Plot higher color by values on top of lower values.width (
int
) – Chart width.height (
int
) – Chart height.size (
Union
[int
,str
,None
]) – Field in .var_names, adata.var, or adata.obs to size the points by or a pixel size.dot_min – Minimum dot size when sizing points by a field.
dot_max – Maximum dot size when sizing points by a field.
use_raw (
Optional
[bool
]) – Use raw attribute of adata if present.nbins (
int
) – Number of bins used to summarize plot on a grid. Useful for large datasets. Negative one means automatically bin the plot.reduce_function (
Callable
[[array
],float
]) – Function used to summarize overlapping cells if nbins is specified
- Return type
Element