pegasus.pseudo.write_results_to_excel

pegasus.pseudo.write_results_to_excel(results, output_file, ndigits=3)[source]

Write pseudo-bulk DE analysis results into a Excel workbook.

Parameters

  • results (Dict[str, pd.DataFrame]) – DE marker dictionary generated by pg.pseudo.markers.

  • output_file (str) – File name to which the marker dictionary is written.

  • ndigits (int, optional, default: 3) – Round non p-values and q-values to ndigits after decimal point in the excel.

Return type

None

Returns

  • None

  • Marker information is written to file with name output_file. In the generated Excel workbook, each tab stores DE result of up (up) / down (down)-regulated genes.

Examples

>>> pg.pseudo.write_results_to_excel(marker_dict, "result.de.xlsx")