Pegasus for Single Cell Analysis¶
Pegasus is a tool for analyzing transcriptomes of millions of single cells. It is a command line tool, a python package and a base for Cloud-based analysis workflows.
Release Highlights in Current Stable¶
1.2.0 December 25, 2020¶
Add multimodal support on RNA and CITE-Seq data back:
--citeseq-umap-excludein pegasus cluster command.
Add automated doublet cutoff inference to
infer_doubletsfunction in API. ([Li20-2])
Expose doublet detection to command-line tool:
--dbl-cluster-attrin pegasus cluster command.
Add doublet detection tutorial.
Allow multiple marker files used in cell type annotation:
annotatefunction in API;
--markersoption in pegasus annotate_cluster command.
Rename pc_regress_out function in API to
Update the regress out tutorial.