Pegasus for Single Cell Analysis

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Pegasus is a tool for analyzing transcriptomes of millions of single cells. It is a command line tool, a python package and a base for Cloud-based analysis workflows.

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Release Highlights in Current Stable

1.3.0 February 2, 2021

  • Make PCA more reproducible. No need to keep options for robust PCA calculation:

    • In pca function, remove argument robust.

    • In infer_doublets function, remove argument robust.

    • In pegasus cluster command, remove option --pca-robust.

  • Add control on number of parallel threads for OpenMP/BLAS.

    • Now n_jobs = -1 refers to use all physical CPU cores instead of logcal CPU cores.

  • Remove function reduce_diffmap_to_3d. In pegasus cluster command, remove option --diffmap-to-3d.

  • Enhance compo_plot and dotplot functions’ usability.

  • Bug fix.