Pegasus for Single Cell Analysis¶
Pegasus is a tool for analyzing transcriptomes of millions of single cells. It is a command line tool, a python package and a base for Cloud-based analysis workflows.
Release Highlights in Current Stable¶
1.3.0 February 2, 2021¶
Make PCA more reproducible. No need to keep options for robust PCA calculation:
In
pca
function, remove argumentrobust
.In
infer_doublets
function, remove argumentrobust
.In pegasus cluster command, remove option
--pca-robust
.
Add control on number of parallel threads for OpenMP/BLAS.
Now n_jobs = -1 refers to use all physical CPU cores instead of logcal CPU cores.
Remove function
reduce_diffmap_to_3d
. In pegasus cluster command, remove option--diffmap-to-3d
.Enhance compo_plot and dotplot functions’ usability.
Bug fix.