pegasus.find_outlier_clusters

pegasus.find_outlier_clusters(data, cluster_attr, qc_attr)[source]

Using MWU test to detect if any cluster is an outlier regarding one of the qc attributes: n_genes, n_counts, percent_mito.

Parameters
  • data (MultimodalData or UnimodalData object) – Annotated data matrix with rows for cells and columns for genes.

  • cluster_attr (str) – Attribute in data.obs representing cluster assignment, e.g. ‘louvain_labels’

  • qc_attr (str) – One of the QC attribute, choosing from ‘n_genes’, ‘n_counts’ and ‘percent_mito’.

Return type

DataFrame