pegasus.pseudo.get_original_DE_result

pegasus.pseudo.get_original_DE_result(pseudobulk, de_key='deseq2')[source]

Get the original DESeq2 result as a data frame.

Parameters

pseudobulk (MultimodalData object.) – Pseudobulk data matrix.
de_key (str, optional, default: deseq2) – The varm keyword for DE results. data.varm[de_key] should store the full DE result table.

Return type

DataFrame

Returns

pandas.DataFrame object – A Pandas data frame containing the original DESeq2 analysis result.

Examples

>>> pg.pseudo.get_original_DE_result(pseudobulk)