pegasus.get_filter_stats

pegasus.get_filter_stats(data)

Calculate filtration stats on cell barcodes and genes, respectively.

Parameters

data (anndata.AnnData) – Annotated data matrix with rows for cells and columns for genes.

Return type

Tuple[DataFrame, DataFrame]

Returns

• df_cells (pandas.DataFrame) – Data frame of stats on cell filtration.

• df_genes (pandas.DataFrame) – Data frame of stats on gene filtration.

Examples

>>> pg.get_filter_stats(adata)