pegasus.infer_path¶
- pegasus.infer_path(data, cluster, clust_id, path_name, k=10)[source]¶
Inference on path of a cluster.
- Parameters
data (
anndata.AnnData
) – Annotated data matrix with rows for cells and columns for genes.cluster (
str
) – Cluster name. Must exist indata.obs
.clust_id – Cluster label. Must be a value of
data.obs[cluster]
.path_name (
str
) – Key name of the resulting path information.k (
int
, optional, default:10
) – Number of nearest neighbors on Diffusion Map coordinates used in path reference.
- Returns
None
Update
data.obs
–data.obs[path_name]
: The inferred path information on Diffusion Map about a specific cluster.
Examples
>>> pg.infer_path(adata, cluster = 'leiden_labels', clust_id = '1', path_name = 'leiden_1_path')