Pegasus
1.8.0
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Use Pegasus as a command line tool
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Pegasus
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Index
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Index
A
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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P
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Q
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R
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S
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T
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U
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V
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W
A
aggregate_matrices() (in module pegasus)
annotate() (in module pegasus)
arcsinh() (in module pegasus)
attach_demux_results() (in module pegasus)
C
calc_kBET() (in module pegasus)
calc_kSIM() (in module pegasus)
calc_pseudotime() (in module pegasus)
calc_signature_score() (in module pegasus)
calculate_z_score() (in module pegasus)
cluster() (in module pegasus)
compo_plot() (in module pegasus)
D
de_analysis() (in module pegasus)
demultiplex() (in module pegasus)
dendrogram() (in module pegasus)
deseq2() (in module pegasus)
diffmap() (in module pegasus)
dotplot() (in module pegasus)
E
elbowplot() (in module pegasus)
estimate_background_probs() (in module pegasus)
F
fgsea() (in module pegasus)
filter_data() (in module pegasus)
find_markers() (in module pegasus)
find_outlier_clusters() (in module pegasus)
fle() (in module pegasus)
G
get_filter_stats() (in module pegasus)
get_neighbors() (in module pegasus)
H
heatmap() (in module pegasus)
highly_variable_features() (in module pegasus)
hvfplot() (in module pegasus)
I
identify_robust_genes() (in module pegasus)
infer_cell_types() (in module pegasus)
infer_doublets() (in module pegasus)
infer_path() (in module pegasus)
integrative_nmf() (in module pegasus)
L
leiden() (in module pegasus)
log1p() (in module pegasus)
log_norm() (in module pegasus)
louvain() (in module pegasus)
M
mark_doublets() (in module pegasus)
markers() (in module pegasus)
(in module pegasus.pseudo)
N
neighbors() (in module pegasus)
net_fle() (in module pegasus)
net_umap() (in module pegasus)
nmf() (in module pegasus)
normalize() (in module pegasus)
P
pca() (in module pegasus)
plot_gsea() (in module pegasus)
predict_scarches_scanvi() (in module pegasus)
pseudobulk() (in module pegasus)
Q
qc_metrics() (in module pegasus)
qcviolin() (in module pegasus)
R
rank_plot() (in module pegasus)
read_input() (in module pegasus)
regress_out() (in module pegasus)
ridgeplot() (in module pegasus)
run_harmony() (in module pegasus)
run_scanorama() (in module pegasus)
run_scvi() (in module pegasus)
S
scatter() (in module pegasus)
scatter_groups() (in module pegasus)
search_de_genes() (in module pegasus)
search_genes() (in module pegasus)
select_features() (in module pegasus)
spatial() (in module pegasus)
spectral_leiden() (in module pegasus)
spectral_louvain() (in module pegasus)
split_one_cluster() (in module pegasus)
T
train_scarches_scanvi() (in module pegasus)
tsne() (in module pegasus)
U
umap() (in module pegasus)
V
violin() (in module pegasus)
volcano() (in module pegasus)
(in module pegasus.pseudo)
W
wordcloud() (in module pegasus)
write_output() (in module pegasus)
write_results_to_excel() (in module pegasus)
(in module pegasus.pseudo)
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v: 1.8.0
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